Module 14: Multiple and Logistic Regression
Model Selection
Barbara Illowsky & OpenStax et al.
In practice, the model that includes all available explanatory variables is often referred to as the full model. The full model may not be the best model, and if it isn’t, we want to identify a smaller model that is preferable.
Identifying variables in the model that may not be helpful
Adjusted R2 describes the strength of a model fit, and it is a useful tool for evaluating which predictors are adding value to the model, where adding value means they are (likely) improving the accuracy in predicting future outcomes.
Let’s consider two models, which are shown in Tables 1 and 2. The first table summarizes the full model since it includes all predictors, while the second does not include the duration variable.
df = 136
| Table 1. The fit for the full regression model, including the adjusted R2. | ||||
|---|---|---|---|---|
| Estimate | Std. Error | t value | Pr( >|t|) | |
| (Intercept) | 36.2110 | 1.5140 | 23.92 | 0.0000 |
| cond_new | 5.1306 | 1.0511 | 4.88 | 0.0000 |
| stock_photo | 1.0803 | 1.0568 | 1.02 | 0.3085 |
| duration | –0.0268 | 0.1904 | –0.14 | 0.8882 |
| wheels | 7.2852 | 0.5547 | 13.13 | 0.0000 |
| R2adj = 0.7108 |
| Table 2. The fit for the regression model for predictors cond_new, stock_photo, and wheels. | ||||
|---|---|---|---|---|
| Estimate | Std. Error | t value | Pr( >|t|) | |
| (Intercept) | 36.0483 | 0.9745 | 36.99 | 0.0000 |
| cond_new | 5.1763 | 0.9961 | 5.20 | 0.0000 |
| stock_photo | 1.1177 | 1.0192 | 1.10 | 0.2747 |
| wheels | 7.2984 | 0.5448 | 13.40 | 0.0000 |
| R2adj = 0.7128 |
Example
Which of the two models is better?
Solution:
We compare the adjusted R2 of each model to determine which to choose. Since the first model has an R2adj smaller than the R2adj of the second model, we prefer the second model to the first.
Will the model without duration be better than the model with duration? We cannot know for sure, but based on the adjusted R2, this is our best assessment.
Two model selection strategies
Two common strategies for adding or removing variables in a multiple regression model are called backward elimination and forward selection. These techniques are often referred to as stepwise model selection strategies, because they add or delete one variable at a time as they “step” through the candidate predictors.
Backward elimination starts with the model that includes all potential predictor variables. Variables are eliminated one-at-a-time from the model until we cannot improve the adjusted R2. The strategy within each elimination step is to eliminate the variable that leads to the largest improvement in adjusted R2.
Example
Results corresponding to the full model for the mario kart data are shown in Table 8.6. How should we proceed under the backward elimination strategy?
Solution:
Our baseline adjusted R2 from the full model is R2adj = 0.7108, and we need to determine whether dropping a predictor will improve the adjusted R2. To check, we
fit four models that each drop a different predictor, and we record the adjusted R2
from each:
[latex]begin{array}text{Exclude . . .}hfill&text{cond_new}hfill&text{stock_photo}hfill&text{duration}hfill&text{wheels}\text{ }hfill&R^2_{adj}=0.6626hfill&R^2_{adj}=0.7107hfill&R^2_{adj}=0.7128hfill&R^2_{adj}=0.3487end{array}[/latex]The third model without duration has the highest adjusted R2 of 0.7128, so we compare it to the adjusted R2 for the full model. Because eliminating duration leads to a model with a higher adjusted R2, we drop duration from the model. Since we eliminated a predictor from the model in the first step, we see whether we should eliminate any additional predictors. Our baseline adjusted R2 is now R2adj = 0.7128. We now fit three new models, which consider eliminating each of the three remaining predictors:
[latex]begin{array}text{Exclude duration and . . .}hfill&text{cond_new}hfill&text{stock_photo}hfill&text{wheels}\text{ }hfill&R^2_{adj}=0.6587hfill&R^2_{adj}=0.7124hfill&R^2_{adj}=0.3414end{array}[/latex]None of these models lead to an improvement in adjusted R2, so we do not eliminate any of the remaining predictors. That is, after backward elimination, we are left with the model that keeps cond new, stock photos, and wheels, which we can summarize using the coefficients from Table 2:
[latex]displaystylehat{y}=b_0+b_1x_1+b_2x_2+b_4x_4[/latex][latex]displaystylewidehat{text{price}}=36.05+5.18timestext{cond_new}+1.12timestext{stock_photo}+7.30timestext{wheels}[/latex]
The forward selection strategy is the reverse of the backward elimination technique. Instead of eliminating variables one-at-a-time, we add variables one-at-a-time until we cannot find any variables that improve the model (as measured by adjusted R2).
Example
Construct a model for the mario kart data set using the forward selection strategy.
Solution:
We start with the model that includes no variables. Then we fit each of the possible models with just one variable. That is, we fit the model including just cond_new, then the model including just stock photo, then a model with just duration, and a model with just wheels. Each of the four models provides an adjusted R2 value:
[latex]begin{array}text{Add . . .}hfill&text{cond_new}hfill&text{stock_photo}hfill&text{duration}hfill&text{wheels}\text{ }hfill&R^2_{adj}=0.3459hfill&R^2_{adj}=0.0332hfill&R^2_{adj}=0.1338hfill&R^2_{adj}=0.6390end{array}[/latex]In this first step, we compare the adjusted R2 against a baseline model that has no predictors. The no-predictors model always has R2adj = 0. The model with one predictor that has the largest adjusted R2 is the model with the wheels predictor, and because this adjusted R2 is larger than the adjusted R2 from the model with no predictors (R2adj = 0), we will add this variable to our model.
We repeat the process again, this time considering 2-predictor models where one of the predictors is wheels and with a new baseline of R2adj = 0.6390:
[latex]begin{array}text{Add wheels and . . .}hfill&text{cond_new}hfill&text{stock_photo}hfill&text{duration}\text{ }hfill&R^2_{adj}=0.7124hfill&R^2_{adj}=0.6587hfill&R^2_{adj}=0.6528end{array}[/latex]The best predictor in this stage, cond new, has a higher adjusted R2 (0.7124) than the baseline (0.6390), so we also add cond_new to the model.
Since we have again added a variable to the model, we continue and see whether it would be beneficial to add a third variable:
[latex]begin{array}text{Add wheels, cond_new, and . . .}hfill&text{stock_photo}hfill&text{duration}\text{ }hfill&R^2_{adj}=0.7128hfill&R^2_{adj}=0.7107end{array}[/latex]The model adding stock photo improved adjusted R2 (0.7124 to 0.7128), so we add stock_photo to the model.
Because we have again added a predictor, we check whether adding the last variable, duration, will improve adjusted R2. We compare the adjusted R2 for the model with duration and the other three predictors (0.7108) to the model that only considers wheels, cond_new, and stock photo (0.7128). Adding duration does not improve the adjusted R2, so we do not add it to the model, and we have arrived at the same model that we identified from backward elimination.
Model Selection Strategies
Backward elimination begins with the largest model and eliminates variables one-by-one until we are satisfied that all remaining variables are important to the model. Forward selection starts with no variables included in the model, then it adds in variables according to their importance until no other important variables are found.
There is no guarantee that backward elimination and forward selection will arrive at the same final model. If both techniques are tried and they arrive at different models, we choose the model with the larger R2adj; other tie-break options exist but are beyond the scope of this book.
The p-Value Approach, an Alternative to Adjusted R2
The p-value may be used as an alternative to adjusted R2 for model selection.
In backward elimination, we would identify the predictor corresponding to the largest p-value. If the p-value is above the significance level, usually α = 0.05, then we would drop that variable, refit the model, and repeat the process. If the largest p-value is less than α = 0.05, then we would not eliminate any predictors and the current model would be our best-fitting model.
In forward selection with p-values, we reverse the process. We begin with a model that has no predictors, then we fit a model for each possible predictor, identifying the model where the corresponding predictor’s p-value is smallest. If that p-value is smaller than α = 0.05, we add it to the model and repeat the process, considering whether to add more variables one-at-a-time. When none of the remaining predictors can be added to the model and have a p-value less than 0.05, then we stop adding variables and the current model would be our best-fitting model.
Try It
Examine Table 2, which considers the model including the cond_new, stock_photo, and wheels predictors. If we were using the p-value approach with backward elimination and we were considering this model, which of these three variables would be up for elimination? Would we drop that variable, or would we keep it in the model?
Solution:
The stock photo predictor is up for elimination since it has the largest p-value. Additionally, since that p-value is larger than 0.05, we would in fact eliminate stock photo from the model.
While the adjusted R2 and p-value approaches are similar, they sometimes lead to different models, with the adjusted R2 approach tending to include more predictors in the final model. For example, if we had used the p-value approach with the auction data, we would not have included the stock photo predictor in the final model.
When to use the adjusted R2 and when to use the p-value approach
When the sole goal is to improve prediction accuracy, use adjusted R2. This is commonly the case in machine learning applications.
When we care about understanding which variables are statistically significant predictors of the response, or if there is interest in producing a simpler model at the potential cost of a little prediction accuracy, then the p-value approach is preferred.
Regardless of whether you use adjusted R2 or the p-value approach, or if you use the backward elimination of forward selection strategy, our job is not done after variable selection. We must still verify the model conditions are reasonable.